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Hyun Jung Kim Laboratory

❮Inflammation & Immunity Hyun Jung Kim Laboratory
  • Hyun Jung Kim Laboratory
  • Principal Investigator
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Principal Investigator

Hyun Jung Kim Headshot

Hyun Jung Kim, PhD

Assistant Staff
Email: [email protected]
Location: Cleveland Clinic Main Campus

Research

The Biomimetic MicroEngineering (BioME) laboratory has focused on innovating bioinspired engineering principles to uncover the fundamental mechanism in human health and diseases. The human Organ-on-a-Chip, also known as the Microphysiological System (MPS), has emerged as an alternative experimental model to accurately recapitulate the host-microbiome ecosystem and predict human physiological responses. We have created novel biomimicry to reconstitute the three-dimensional (3D) physical structure, physiological functions, and dynamic biomechanics of the living human gut.

We are particularly interested in emulating the host-microbiome interactions that orchestrate intestinal homeostasis and disease development. In collaboration with clinicians, our breakthrough technology enables us to develop unprecedented “Personalized Disease-on-a-Chip” models by integrating patient-derived organoids, microbiomes, and immune cells. Using this model, we have delved into the pathological contribution of the gut microbiome in gastrointestinal diseases such as inflammatory bowel disease (IBD), including Crohn’s disease (CD) and ulcerative colitis (UC), colorectal cancer (CRC), and infectious diseases.

Our overarching goal is to understand causality vs. consequence of the host-microbiome crosstalk at various disease milieus by leveraging a patient-specific Disease-on-a-Chip. We will continually innovate our disruptive technology to manipulate pathophysiological manifestation in the human oral cavity, nasal path, vagina, placenta, skin, liver, and gut-brain axis. Finally, we will disseminate our cutting-edge technology to contribute to scientific, clinical, and pharmaceutical communities by unraveling high-risk medical problems.


Biography

Hyun Jung Kim, PhD, is the Principal Investigator of The Biomimetic Microengineering (BioME) Laboratory in the Department of Inflammation and Immunity at Cleveland Clinic. He has focused on innovating microphysiological platform technologies to uncover fundamental questions in human health and diseases. By leveraging the miniaturized human “Gut-on-a-chip” microsystem, Dr. Kim has developed paradigm-shifting models that reconstitute the physical structure, physiological function, and mechanical dynamics of the living human intestine (Nat. Protoc. 2022; PNAS 2018; iScience, 2019 & 2020; PNAS, 2016). His research group has been particularly interested in emulating a host-microbiome ecosystem that orchestrates human health and diseases by integrating transdisciplinary approaches of clinical microbiology, microfluidics, and tissue engineering. He has spearheaded to develop a “Patient’s Avatar” model by integrating patient-derived organoids, fecal microbiota, and tissue-specific immune cells to emulate the pathophysiology of inflammatory bowel disease (IBD) including Crohn’s disease (CD) and ulcerative colitis (UC) and colorectal cancer (CRC).


Education & Professional Highlights

ACADEMIC & PROFESSIONAL APPOINTMENT

 07/2022 – present   Cleveland Clinic, Lerner Research Institute, Cleveland, OH, USA

                                 Assistant Staff, Department of Inflammation and Immunity

02/2023 – present    Assistant Staff, Department of Biomedical Engineering (Joint Appointment)

04/2023 – present    Assistant Professor, Department of Biomedical Engineering, Cleveland Clinic Lerner College of Medicine (CCLCM) of Case Western Reserve University

01/2015 – 06/2022   The University of Texas at Austin, Austin, TX, USA                                                

                                 Assistant Professor, Department of Biomedical Engineering, Cockrell School of Engineering 

 

EDUCATION & TRAINING

Harvard University, Boston, MA, USA

09/2012 – 12/2014   Technology Development Fellow, Wyss Institute for Biologically Inspired Engineering (Advisor: Donald E. Ingber, MD, PhD)

07/2009 – 08/2012   Postdoctoral Fellow, Wyss Institute for Biologically Inspired Engineering (Advisor: Donald E. Ingber, MD, PhD)

The University of Chicago, Chicago, IL, USA

03/2007 – 06/2009   Postdoctoral Scholar, Department of Chemistry (Advisor: Rustem F. Ismagilov, PhD)

Yonsei University, Seoul, Republic of Korea

09/2005 – 02/2007   Research Associate, Institute of Life Science and Biotechnology (Advisor: Chul Soo Shin, PhD)

09/2000 – 08/2005   PhD in Biotechnology (Advisor: Chul Soo Shin, PhD)

03/1998 – 08/2000   MS in Biotechnology (Advisor: Chul Soo Shin, PhD)

03/1994 – 02/1998   BE in Biotechnology  

 

AWARDS & HONORS (Selected)

2023                     Senior Research Award, Crohn’s and Colitis Foundation of America, USA

2023                     2022 Inventor, Office of Innovations, Cleveland Clinic Foundation, USA

2023                     CTSC Core Utilization Pilot Grant Award, Case Western Reserve University, USA 

2022                     Career Development Program Award, Lerner Research Institute, Cleveland Clinic, USA

2021                     2020 Research Excellence in Korean Biomedical Science, Medical Research Information Center, Korea

2018                     Technology Impact Award, Cancer Research Institute (CRI), USA

2017                     Texas 4000 Seed Grant Award, Dept. of Biomedical Engineering, UT Austin, USA

2016                     Innovator Awards, Kenneth Rainin Foundation, USA

2015                     Featured Designer for Organs-on-Chips, Museum of Modern Art (MoMA), New York, USA

2013                     Abcam Discovery 15 Contest Finalist ($1,000 credit), USA

2013                     2013 Invented Here! Honoree. New England’s Breakthrough Inventions and Inventors. Boston, MA, USA

2013                     Best Paper Award. ALine, Inc., 2013 ASME (NEMB 2013). Feb 4-6, 2013, Boston, MA, USA

2012 - 2014          Wyss Technology Development Fellowship, Wyss Institute, Harvard University, USA

2012                     Best Presentation Award for Postdocs. The Korean Toxicologists Association in America. SOT 2012, San Francisco, CA, USA

2012                     Postdoctoral Award (1st place). In Vitro and Alternative Methods Special Section, SOT 2012, San Francisco, CA, USA

2007 - 2008          Leo Kadanoff and Stuart Rice Postdoctoral Fellowship, The University of Chicago, USA

2003 - 2004          Fellowship for Young Scientist, Korea Research Foundation, Korea

2001                     Scholarship for Excellent Student, Yonsei University, Seoul, Korea

1994                     Yonsei Special Award for the Freshman in Matriculation, Yonsei University, Seoul, Korea

Research

Research

Overview

The Biomimetic MicroEngineering (BioME) laboratory has focused on innovating bioinspired engineering principles to uncover the fundamental mechanism in human health and diseases. The human Organ-on-a-Chip, also known as the Microphysiological System (MPS), has emerged as an alternative experimental model to accurately recapitulate the host-microbiome ecosystem and predict human physiological responses. We have created novel biomimicry to reconstitute the three-dimensional (3D) physical structure, physiological functions, and dynamic biomechanics of the living human gut.

We are particularly interested in emulating the host-microbiome interactions that orchestrate intestinal homeostasis and disease development. In collaboration with clinicians, our breakthrough technology enables us to develop unprecedented “Personalized Disease-on-a-Chip” models by integrating patient-derived organoids, microbiomes, and immune cells. Using this model, we have delved into the pathological contribution of the gut microbiome in gastrointestinal diseases such as inflammatory bowel disease (IBD) including Crohn’s disease (CD) and ulcerative colitis (UC), colorectal cancer (CRC), and infectious diseases.

Our overarching goal is to understand causality vs. consequence of the host-microbiome crosstalk at various disease milieus by leveraging a patient-specific Disease-on-a-Chip. We will continually innovate our disruptive technology to manipulate pathophysiological manifestation in the human oral cavity, nasal path, vagina, placenta, skin, liver, and gut-brain axis. Finally, we will disseminate our cutting-edge technology to contribute to scientific, clinical, and pharmaceutical communities by unraveling high-risk medical problems.

Our Team

Our Team

Publications

Selected Publications

View publications for Hyun Jung Kim, PhD
(Disclaimer: This search is powered by PubMed, a service of the U.S. National Library of Medicine. PubMed is a third-party website with no affiliation with Cleveland Clinic.)


Selected Publications

  1. Yong Cheol Shin*, Nam Than*, Soyoun Min, Woojung Shin+, and Hyun Jung Kim+. Modelling Host-Microbiome Interactions in Organs-on-chip Platforms. Nat. Rev. Bioeng., 2023. (*Equally contributed; +Co-correspondence; Published online on Nov 17, 2023)
  2. Soyoun Min*, Nam Than*, Yong Cheol Shin, Grace Hu, Woojung Shin, Yoko M. Ambrosini, and Hyun Jung Kim. Live probiotic bacteria administered in a pathomimetic Leaky Gut Chip ameliorate impaired epithelial barrier and mucosal inflammation. Sci. Rep., 2022, 12, 22641. (*Equally contributed; Published online on Dec 31, 2022) 
  3.  Woojung Shin*, Zhe Su*, Song Yi+, and Hyun Jung Kim+. Single-cell transcriptomic mapping of intestinal epithelium that undergoes mechanodynamic stimulation and 3D morphogenesis in a gut-on-a-chip. iScience, 2022, 25, 105521 (*Equally contributed; +Co-correspondence; Published online on Nov 7, 2022) 
  4. Jaeseung Youn*, Hyeonjun Hong*, Woojung Shin, Dohui Kim, Hyun Jung Kim+, and Dong Sung Kim+. Thin and stretchable extracellular matrix (ECM) membrane reinforced by nanofiber scaffolds for developing in vitro barrier models. Biofabrication, 2022, 14, 025010. (*Equally contributed, +Co-correspondence; Published online on Feb 8, 2022)
  5. Woojung Shin and Hyun Jung Kim. 3D In Vitro Morphogenesis of Human Intestinal Organoids or Caco-2 Cells in a Gut-on-a-chip or a Hybrid Chip with a Cell Culture Insert. Nat. Protoc. 2022, 17, 910-939. (Published online on Feb 2, 2022)
  6. Hyein Lee, Woojung Shin, Hyun Jung Kim+, and Joohoon Kim+. Turn-on Fluorescent Sensing of Oxygen with Dendrimer-Encapsulated Platinum Nanoparticles as a Tunable Oxidase Mimicry for Spatially Resolved Measurement of Oxygen Gradient in a Human Gut-on-a-Chip. Anal. Chem., 2021, 93, 16123-16132. (+Co-correspondence; Published online on Nov 22, 2021)
  7. Hohyeon Han, Yejin Park, Yoo-mi Choi, Uijung Yong, Byeongmin Kang, Woojung Shin, Soyoun Min, Hyun Jung Kim, and Jinah Jang. A Bioprinted Tubular Intestine Model using a Colon-Specific Extracellular Matrix Bioink. Adv. Healthcare Mater., 2021, 2101768. (Published online: Nov 7, 2021)
  8. Hyeon Beom Chong*, Jaeseung Youn*, Woojung Shin, Hyun Jung Kim+, and Dong Sung Kim+. Multiplex recreation of human intestinal morphogenesis on multi-well inserts platform by basolateral convective flow. Lab Chip. 2021, 21, 3316-3327. (*Equally contributed, +Co-correspondence; Published online: Jul 29, 2021)
  9. Woojung Shin, Alexander Wu, Soyoun Min, Yong Cheol Shin, R. Y. Declan Fleming, S. Gail Eckhardt, and Hyun Jung Kim. Spatiotemporal gradient and instability of Wnt induce heterogeneous growth and differentiation of human intestinal organoids. iScience 2020, 23, 101372. (Published online: Aug 21, 2020)
  10. Woojung Shin*, Yoko M. Ambrosini*, Yong Cheol Shin*, Alexander Wu, Soyoun Min, Domin Koh, Sowon Park, Seung Kim, Hong Koh, and Hyun Jung Kim. Robust Formation of an Epithelial Layer of Human Intestinal Organoids in a Polydimethylsiloxane-based Gut-on-a-chip Microdevice. Front. Med. Technol. 2020, 2, 2. (*Equally contributed; Published online: Aug 7, 2020)
  11. Yong Cheol Shin*, Woojung Shin*, Yoko M. Ambrosini, Domin Koh, Alexander Wu, Soyoun Min, S. Gail Eckhardt, R. Y. Declan Fleming, Seung Kim, Sowon Park, Hong Koh, Tae Kyung Yoo, and Hyun Jung Kim. Three-dimensional regeneration of patient-derived intestinal organoid epithelium in a physiodynamic mucosal interface-on-a-chip. Micromachines 2020, 11, 663. (*Equally contributed; Published online: Jul 7, 2020)
  12. Woojung Shin, Christopher D. Hinojosa, Donald E. Ingber, and Hyun Jung Kim, Human intestinal morphogenesis controlled by transepithelial morphogen gradient and flow-dependent physical cues in a microengineered gut-on-a-chip. iScience 2019, 15, 391-406. (Published online: May 31, 2019)
  13. Woojung Shin*, Alexander Wu*, Miles Massidda*, Charlie Foster, Newin Thomas, Dong-Woo Lee, Hong Koh, Youngwon Ju, Joohoon Kim, and Hyun Jung Kim. A robust longitudinal co-culture of obligate anaerobic gut microbiome with human intestinal epithelium in an anoxic-oxic interface-on-a-chip. Front. Bioeng. Biotechnol. 2019, 7, 13. (*Equally contributed; Published online: Feb 7, 2019)
  14. Woojung Shin and Hyun Jung Kim. Intestinal barrier dysfunction orchestrates the onset of inflammatory host-microbiome cross-talk in a human gut inflammation-on-a-chip. Proc. Natl. Acad. Sci. U.S.A. 2018, 115, E10539-E10547. (Published online: Oct 22, 2018)
  15. Amir Bein*, Woojung Shin*, Sasan Jalili-Firoozinezhad, Min Hee Park, Alexandra Sontheimer-Phelps, Alessio Tovaglieri, Angeliki Chalkiadaki, Hyun Jung Kim+, and Donald E. Ingber+. Microfluidic Organ-on-a-Chip models of Human Intestine. Cell. Mol. Gastro. Hep. 2018, 5, 659-668. (*Equally contributed; +Co-correspondence; Published online: Jan 2018)
  16. Hyun Jung Kim, Hu Li, James J. Collins,and Donald E. Ingber. Contributions of microbiome and mechanical deformation to intestinal bacterial overgrowth and inflammation in a human gut-on-a-chip. Proc. Natl. Acad. Sci. U.S.A. 2016, 113, E7-E15. (Published online: Dec 14, 2015)
  17. Hyun Jung Kim and Donald E. Ingber. Gut-on-a-Chip microenvironment induces human intestinal cells to undergo villus differentiation. Integr. Biol. 2013, 5, 1130-1140. (Published online: Jun 26 2013)
  18. Hyun Jung Kim, Dongeun Huh, Geraldine Hamilton, and Donald E. Ingber. Human Gut-on-a-Chip inhabited by microbial flora that experiences intestinal peristalsis-like motions and flow. Lab Chip 2012, 12, 2165-2174. (Published online: Mar 8, 2012)
  19. Hyun Jung Kim*, James Q. Boedicker*, Jang Wook Choi, and Rustem F. Ismagilov. Defined spatial structure stabilizes a synthetic multispecies bacterial community. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 18188-18193. (*Equally contributed; Published online: Nov 14, 2008)

Careers

Careers

Microbiome-mediated disease modeling in Organs-on-chips

We are seeking a talented, motivated candidate to join collaborative translational projects looking at the role of the gut microbiome in various human gastrointestinal (GI) diseases including inflammatory bowel disease (IBD) such as Crohn’s disease (CD), ulcerative colitis (UC), colorectal cancer (CRC), celiac disease (CeD), irritable bowel syndrome (IBS), or infectious diseases such as Clostridioides difficile infection (CDI). The multidisciplinary projects aim to discover the pathophysiological role of the gut microbiota on the initiation and development of GI diseases in concert with complex microenvironmental factors including epithelium, immune components, and mechanobiological stimulations.

Skills required: Rigorous scientific training in the design and analysis of research is necessary. A strong record of prior research accomplishments is encouraged. Successful postdoc candidates should present one or more of i) strong research expertise in mucosal immunology, cancer immunology, or host-microbiome interactions, ii) strong expertise in synthetic biology, metabolic engineering, or microbial genetic engineering, iii) strong skillsets in cell and tissue engineering, iv) strong disease-specific multi-omics training including single-cell transcriptomics and metabolomics, or v) strong academic records in human microphysiological system (MPS). Candidates should send their CV and a Cover Letter to Dr. Hyun Jung Kim ([email protected]). In the Cover Letter, please specify your qualifications pertinent to project requirements on the job description. It is highly recommended to include a 1-page research portfolio in your CV.

 

Development of a multiplex, scalable Organs-on-chips microplatform

The BioME lab at Lerner Research Institute at Cleveland Clinic is seeking a talented, motivated postdoctoral fellow to work on the development of a novel Organs-on-chips microplatform to be implementable for multiplex and scalable assessment of host-microbiome interactions. The successful postdoc candidates will work at Cleveland Clinic to innovate the structure and functionality of conventional Organ-on-a-chip devices for advanced modularity, interactive accessibility, and multi-functional affordability.

Skills required: Rigorous scientific training in the design and analysis of research is necessary. A strong record of prior research accomplishments is encouraged. The ideal candidates should have one or more of i) strong research expertise in mechanical engineering, manufacturing, automation, or mechatronics engineering, ii) strong technical experiences in human microphysiological system (MPS) or 3D printing/bioprinting, iii) strong skillsets in cell and tissue engineering, or iv) strong expertise in biomaterials and materials science. Candidates with track records in industry experiences in Organs-on-chips, device manufacturing, or high-throughput automated systems are highly encouraged to apply. Prospective candidates should send their CV and a Cover Letter to Dr. Hyun Jung Kim ([email protected]). In the Cover Letter, please specify your qualifications pertinent to project requirements on the job description. It is highly recommended to include a 1-page research portfolio in your CV.


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